Submissions from 2024
Large airway T cells in adults with former bronchopulmonary dysplasia, Jing Gao, Petra Um-Bergström, Melvin Pourbazargan, Eva Berggren-Broström, Chuan X. Li, Heta Merikallio, Riitta Kaarteenaho, Nichole S. Reinke, Craig E. Wheelock, Erik Melén, Lindén Anders, Åsa M. Wheelock, Georgios Rassidakis, Cristian Ortiz-Villalon, and Magnus C. Sköld
Simultaneous extraction and quantitative analysis of S-methyl-L-cysteine sulfoxide, sulforaphane and glucosinolates in cruciferous vegetables by liquid chromatography mass spectrometry, Armaghan Shafaei, Caroline R. Hill, Jonathan M. Hodgson, Lauren C. Blekkenhorst, and Mary C. Boyce
Submissions from 2023
Quantitative determination of short chain fatty acids in synthetic feces using gas chromatography with flame ionization detection or mass spectrometry, Hayley Abbiss, Armaghan Shafaei, Mark Bannister, and Mary C. Boyce
Population genomics of Australian Indigenous Mesorhizobium reveals diverse nonsymbiotic genospecies capable of nitrogen-fixing symbioses following horizontal gene transfer, Elena Colombi, Yvette Hill, Rose Lines, John T. Sullivan, Maclean G. Kohlmeier, Claus T. Christophersen, Clive W. Ronson, Jason J. Terpolilli, and Joshua P. Ramsay
S-methyl cysteine sulfoxide and its potential role in human health: A scoping review, Caroline R. Hill, Alex Haoci Liu, Lyn McCahon, Liezhou Zhong, Armaghan Shafaei, Lois Balmer, Joshua R. Lewis, Jonathan M. Hodgson, and Lauren C. Blekkenhorst
Submissions from 2022
Metabolomics reveals mouse plasma metabolite responses to acute exercise and effects of disrupting AMPK-glycogen interactions, Mehdi R. Belhaj, Nathan G. Lawler, John A. Hawley, David I. Broadhurst, Nolan J. Hoffman, and Stacey N. Reinke
Sulfur compounds: From plants to humans and their role in chronic disease prevention, Caroline R. Hill, Armaghan Shafaei, Lois Balmer, Joshua R. Lewis, Jonathan M. Hodgson, A. Harvey Millar, and Lauren C. Blekkenhorst
Changes to the gut microbiome in young children showing early behavioral signs of autism, Jacquelyn Jones, Stacey N. Reinke, Mahsa Mousavi-Derazmahalleh, Debra J. Palmer, and Claus T. Christophersen
Does machine learning have a role in the prediction of asthma in children?, Dimpalben Patel, Graham L. Hall, David Broadhurst, Anne Smith, André Schultz, and Rachel E. Foong
Lipopolysaccharide-induced interferon response networks at birth are predictive of severe viral lower respiratory infections in the first year of life, James F. Read, Michael Serralha, Danny Mok, Barbara J. Holt, Mark Cruickshank, Yuliya V. Karpievitch, David I. Broadhurst, Peter D. Sly, Deborah H. Strickland, Stacey N. Reinke, Patrick G. Holt, and Anthony Bosco
Metabolomics in pulmonary medicine: Extracting the most from your data, Stacey N. Reinke, Romanas Chaleckis, and Craig E. Wheelock
Urinary metabotype of severe asthma evidences decreased carnitine metabolism independent of oral corticosteroid treatment in the U-BIOPRED study, Stacey N. Reinke, Shama Naz, Romanas Chaleckis, Hector Gallart-Ayala, Johan Kolmert, Nazanin Z. Kermani, Angelica Tiotiu, David I. Broadhurst, Anders Lundqvist, Henric Olsson, Marika Strom, Asa M. Wheelock, Cristina Gómez, Magnus Ericsson, Ana R. Sousa, John H. Riley, Stewart Bates, James Scholfield, Matthew Loza, Frederic Baribaud, Per S. Bakke, Massimo Caruso, Pascal Chanez, Stephen J. Fowler, Thomas Geiser, Peter Howarth, Ildiko Horvath, Norbert Krug, Paolo Montuschi, Annelie Behndig, Florian Singer, Jacek Musial, Dominick E. Shaw, Barbro Dahlén, Sile Hu, Jessica Lasky-Su, Peter J. Sterk, Kian Fan Chung, Ratko Djukanovic, Sven Erik Dahlé, Ian M. Adcock, and Craig E. Wheelock
Tocopherols in seeds and nuts: QuEChERS extraction, HPLC separation, and fluorescence detection, Armaghan Shafaei, Hayley Abbiss, Sophie Coutts, Mark Bannister, Janine Bruemmer, and Mary C. Boyce
Providing metabolomics education and training: Pedagogy and considerations, Catherine L. Winder, Michael Witting, Fidele Tugizimana, Warwick B. Dunn, Stacey N. Reinke, and Metabolomics Society Education and Training Committee
Submissions from 2021
Kynurenic acid may underlie sex-specific immune responses to COVID-19, Yuping Cai, Daniel J. Kim, Takehiro Takahashi, David I. Broadhurst, Hong Yan, Shuangge Ma, Nicholas J. W. Rattray, Arnau Casanovas-Massana, Benjamin Israelow, Jon Klein, Carolina Lucas, Tianyang Mao, Adam J. Moore, M. Catherine Muenker, Ji Eun Oh, Julio Silva, Patrick Wong, Albert I. Ko, Sajid A. Khan, Akiko Iwasaki, Caroline H. Johnson, and Yale IMPACT Research team
Fecal sample collection methods and time of day impact microbiome composition and short chain fatty acid concentrations, Jacquelyn Jones, Stacey N. Reinke, Alishum Ali, Debra J. Palmer, and Claus T. Christophersen
A strategy for advancing for population-based scientific discovery using the metabolome: The establishment of the metabolomics society metabolomic epidemiology task group, Jessica Lasky-Su, Rachel S. Kelly, Craig E. Wheelock, and David Broadhurst
Detecting sex-related changes to the metabolome of a critically endangered freshwater crayfish during the mating season, Emily Lette, Quinton Burnham, Nathan Lawler, Pierre Horwitz, Mary C. Boyce, David I. Broadhurst, Rodney Duffy, and Annette Koenders
Early and sustained Lactobacillus plantarum probiotic therapy in critical illness: The randomised, placebo-controlled, restoration of gut microflora in critical illness trial (ROCIT), Edward Litton, Matt Anstey, David Broadhurst, Andy Chapman, Andrew Currie, Janet Ferrier, Joel Gummer, Alisa Higgins, Jolene Lim, Laurens Manning, Erina Myers, Katrina Orr, Anne Marie Palermo, Andrea Paparini, Susan Pellicano, Edward Raby, Anu Rammohan, Adrian Regli, Bernhard Richter, Sam Salman, Tobias Strunk, Sharon Waterson, David Weight, Bradley Wibrow, and Fiona Wood
Ginger and its active compounds in cancer therapy: From folk uses to nano-therapeutic applications, M. F. Mahomoodally, M. Z. Aumeeruddy, Kannan R. R. Rengasamy, S. Roshan, S. Hammad, Jessica Pandohee, Xuebo Hu, and G. Zengin
Improvement in the prediction of neonatal hypoxic-ischemic encephalopathy with the integration of umbilical cord metabolites and current clinical makers, Daragh S. O'Boyle, Warwick B. Dunn, Donna O'Neill, Jennifer A. Kirwan, David I. Broadhurst, Boubou Hallberg, Geraldine B. Boylan, and Deirdre M. Murray
Characterisation of sandalwood essential oils:The application of high performance thin-layer chromatography, Hayford Ofori, Dhanushka Hettiarachchi, Tomislav Sostaric, Jessica Pandohee, Heeral D. Chudasama, and Mary C. Boyce
Risk factors for gut dysbiosis in early life, Kimberley Parkin, Claus T. Christophersen, Valerie Verhasselt, Matthew N. Cooper, and David Martino
Searching for a technology-driven acute rheumatic fever test: The START study protocol, Anna P. Ralph, Rachel Webb, Nicole J. Moreland, Reuben McGregor, Anthony Bosco, David Broadhurst, Timo Lassmann, Timothy C. Barnett, Rym Benothman, Jennifer Yan, Bo Remenyi, Julie Bennett, Nigel Wilson, Mark Mayo, Glenn Pearson, Tobias Kollmann, and Jonathan R. Carapetis
Association between fruit and vegetable intakes and mental health in the australian diabetes obesity and lifestyle cohort, Joanna Rees, Simone Radavelli-Bagatini, Johnny Lo, Jonathan M. Hodgson, Claus T. Christophersen, Robin M. Daly, Dianna J. Magliano, Jonathan E. Shaw, Marc Sim, Catherine P. Bondonno, Lauren C. Blekkenhorst, Joanne M. Dickson, Joshua R. Lewis, and Amanda Devine
Data supporting development and validation of liquid chromatography tandem mass spectrometry method for the quantitative determination of bile acids in feces, Armaghan Shafaei, Joanna Rees, Claus T. Christophersen, Amanda Devine, David Broadhurst, and Mary C. Boyce
Extraction and quantitative determination of bile acids in feces, Armaghan Shafaei, Joanna Rees, Claus T. Christophersen, Amanda Devine, David Broadhurst, and Mary C. Boyce
Sensitive and quantitative determination of short-chain fatty acids in human serum using liquid chromatography mass spectrometry, Armaghan Shafaei, Veronica Vamathevan, Jessica Pandohee, Nathan G. Lawler, David Broadhurst, and Mary C. Boyce
Submissions from 2020
Untargeted liquid chromatography-mass spectrometry-based metabolomics analysis of wheat grain, Hayley Abbiss, Joel P. Gummer, Michael Francki, and Robert D. Trengove
Phenolic composition of 91 Australian apple varieties: towards understanding their health attributes, Catherine P. Bondonno, Nicola P. Bondonno, Sujata Shinde, Armaghan Shafaei, Mary C. Boyce, Ewald Swinny, Steele R. Jacob, Kevin Lacey, Richard J. Woodman, Kevin D. Croft, Michael J. Considine, and Jonathan M. Hodgson
Pharmacokinetics and antiangiogenic studies of potassium koetjapate in rats, Seyedeh F. Jafari, Fouad Saleih R. Al-Suede, Ashwaq H.S. Yehya, Mohamed B.K. Ahamed, Armaghan Shafaei, Muhammad Asif, Yasser M. Tabana, Amin M.S.A. Majid, and Hussein M. Baharetha
“Notame”: Workflow for non-targeted LC-MS metabolic profiling, Anton Klåvus, Marietta Kokla, Stefania Noerman, Ville M. Koistinen, Marjo Tuomainen, Iman Zarei, Topi Meuronen, Merja R. Häkkinen, Soile Rummukainen, Ambrin Farizah Babu, Taisa Sallinen, Olli Karkkainen, Jussi Paananen, David Broadhurst, Carl Brunius, Kati Hanhineva, and Hanhineva
Migrating from partial least squares discriminant analysis to artificial neural networks: A comparison of functionally equivalent visualisation and feature contribution tools using Jupyter Notebooks, Kevin M. Mendez, David I. Broadhurst, and Stacey N. Reinke
Dispersive SPE, an alternative to traditional SPE for extraction of 43 doping peptides from equine urine prior to LC–MS screening, Joanne Pugliese, Mary C. Boyce, Nathan G. Lawler, John Coumbaros, and Thao T. Le
Submissions from 2019
Characterizing the plasma metabolome during 14 days of live-high, train-low simulated altitude: A metabolomic approach, Nathan G. Lawler, Chris R. Abbiss, Joel P.A Gummer, David I. Broadhurst, Andrew D. Govus, Timothy J. Fairchild, Kevin G. Thompson, Laura A. Garvican-Lewis, Christopher J. Gore, Garth L. Maker, Robert D. Trengove, and Jeremiah J. Peiffer
Development and validation of a simple LC-MS/MS method for the simultaneous quantitative determination of trimethylamine-N-oxide and branched chain amino acids in human serum, Thao T. Le, Armaghan Shafaei, Angela Genoni, Claus Christophersen, Amanda Devine, Johnny Lo, Philippa Lyons Wall, and Mary C. Boyce
The application of artificial neural networks in metabolomics: A historical perspective, Kevin M. Mendez, David I. Broadhurst, and Stacey N. Reinke
Combining computational and experimental approaches to select chromophores to enable the detection of fatty acids via HPLC, Jessica Pandohee, Robert J. Rees, Michelle J. S. Spencer, Aaron Raynor, and Oliver A. H. Jones
Simultaneous quantitative analysis of polyphenolic compounds in human plasma by liquid chromatography tandem mass spectrometry, Armaghan Shafaei, Kevin Croft, Jonathan Hodgson, and Mary C. Boyce
The not-so-sterile womb: Evidence that the human fetus is exposed to bacteria prior to birth, Lisa F. Stinson, Mary C. Boyce, Matthew S. Payne, and Jeffrey A. Keelan
Submissions from 2018
Characterizing the plasma metabolome during and following a maximal exercise cycling test, Faizal A. Manaf, Nathan G. Lawler, Jeremiah J. Peiffer, Garth L. Maker, Mary C. Boyce, Timothy J. Fairchild, and David Broadhurst
OnPLS-based multi-block data integration: A multivariate approach to interrogating biological interactions in asthma, Stacey N. Reinke, Beatriz Galindo-Prieto, Tomas Skotare, David I. Broadhurst, Akul Singhania, Daniel Horowitz, Ratko Djukanović, Timothy S.C. Hinks, Paul Geladi, Johan Trygg, and Craig E. Wheelock